Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4YGC

Crystal structure of ERGIC-53/MCFD2, monoclinic calcium-bound form 1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSPRING-8 BEAMLINE BL44XU
Synchrotron siteSPring-8
BeamlineBL44XU
Temperature [K]95
Detector technologyCCD
Collection date2011-07-24
DetectorRAYONIX MX225HE
Wavelength(s)0.90000
Spacegroup nameP 1 21 1
Unit cell lengths73.616, 168.892, 73.955
Unit cell angles90.00, 119.86, 90.00
Refinement procedure
Resolution20.000 - 2.400
R-factor0.207
Rwork0.205
R-free0.24600
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3a4u
RMSD bond length0.013
RMSD bond angle1.509
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareMOLREP
Refinement softwareREFMAC (5.7.0029)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.440
High resolution limit [Å]2.4002.400
Rmerge0.0560.188
Number of reflections61313
<I/σ(I)>38.69.8
Completeness [%]99.7100
Redundancy3.73.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8.529317% PEG8000, 8% ethylene glycol, 0.1 M Tris-HCl

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon