4YB1
20A Mutant c-di-GMP Vc2 Riboswitch bound with 3',3'-cGAMP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-02-10 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9792 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 51.738, 46.836, 80.791 |
Unit cell angles | 90.00, 90.44, 90.00 |
Refinement procedure
Resolution | 43.722 - 2.081 |
R-factor | 0.2223 |
Rwork | 0.218 |
R-free | 0.29850 |
RMSD bond length | 0.012 |
RMSD bond angle | 1.223 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.4_1496) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.800 | 2.140 |
High resolution limit [Å] | 2.080 | 2.080 |
Rmerge | 0.059 | |
Number of reflections | 17467 | |
<I/σ(I)> | 11.3 | 0.6 |
Completeness [%] | 75.2 | 42.2 |
Redundancy | 2 | 1.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 0.1 M Na-citrate pH 5.5, 5% PEG1000, 35% iso-propanol |