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4YB1

20A Mutant c-di-GMP Vc2 Riboswitch bound with 3',3'-cGAMP

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyCCD
Collection date2014-02-10
DetectorADSC QUANTUM 315r
Wavelength(s)0.9792
Spacegroup nameP 1 21 1
Unit cell lengths51.738, 46.836, 80.791
Unit cell angles90.00, 90.44, 90.00
Refinement procedure
Resolution43.722 - 2.081
R-factor0.2223
Rwork0.218
R-free0.29850
RMSD bond length0.012
RMSD bond angle1.223
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX (1.8.4_1496)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]46.8002.140
High resolution limit [Å]2.0802.080
Rmerge0.059
Number of reflections17467
<I/σ(I)>11.30.6
Completeness [%]75.242.2
Redundancy21.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.52930.1 M Na-citrate pH 5.5, 5% PEG1000, 35% iso-propanol

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