Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4YAB

Crystal structure of TRIM24 PHD-bromodomain complexed with 1-methyl-5-(2-methyl-1 3-thiazol-4-yl)-2 3-dihydro-1H-indol-2-one (1)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.3.1
Synchrotron siteALS
Beamline8.3.1
Temperature [K]100
Detector technologyCCD
Collection date2012-12-15
DetectorADSC QUANTUM 315r
Wavelength(s)1.1159
Spacegroup nameC 1 2 1
Unit cell lengths88.640, 36.950, 128.921
Unit cell angles90.00, 110.03, 90.00
Refinement procedure
Resolution60.560 - 1.900
R-factor0.164
Rwork0.161
R-free0.21900
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3o34
RMSD bond length0.018
RMSD bond angle1.794
Data reduction softwareiMOSFLM
Data scaling softwareAimless (0.3.11)
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0073)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]60.56060.5601.940
High resolution limit [Å]1.9009.1101.900
Rmerge0.0870.0310.747
Rpim0.0370.0130.317
Total number of observations180291215411521
Number of reflections29120
<I/σ(I)>12.832.22.2
Completeness [%]92.799.688.8
Redundancy6.26.66.4
CC(1/2)0.9980.9990.802
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.52982.2-2.4M ammonium sulfate, 0.1M HEPES buffer pH 7.5, 2% PEG400 and 8-9% glycerol

220113

PDB entries from 2024-05-22

PDB statisticsPDBj update infoContact PDBjnumon