4Y8C
Crystal structure of phosphodiesterase 9 in complex with (S)-C33
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-BM |
Synchrotron site | APS |
Beamline | 22-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-12-13 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 1.05 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 104.719, 104.719, 270.274 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 97.650 - 2.700 |
R-factor | 0.20654 |
Rwork | 0.205 |
R-free | 0.23119 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.125 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | AMoRE |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | |
Low resolution limit [Å] | 100.000 |
High resolution limit [Å] | 2.700 |
Rmerge | 0.125 |
Number of reflections | 42348 |
<I/σ(I)> | 7.2 |
Completeness [%] | 100.0 |
Redundancy | 16.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 277 | 0.1 M HEPES, pH 7.5, 3.0 M sodium formate, soaked in crystallization buffer + 2 mM (S)-C33 at 298K for 1 day |