4Y04
Crystal structure of dipeptidyl peptidase 11 (DPP11) from Porphyromonas gingivalis (Space)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | PHOTON FACTORY BEAMLINE BL-17A |
| Synchrotron site | Photon Factory |
| Beamline | BL-17A |
| Temperature [K] | 95 |
| Detector technology | CCD |
| Collection date | 2014-11-25 |
| Detector | ADSC QUANTUM 270 |
| Wavelength(s) | 0.98 |
| Spacegroup name | C 2 2 21 |
| Unit cell lengths | 99.140, 103.280, 175.310 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 40.000 - 1.660 |
| R-factor | 0.18807 |
| Rwork | 0.186 |
| R-free | 0.22473 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4y01 |
| RMSD bond length | 0.020 |
| RMSD bond angle | 1.955 |
| Data reduction software | XDS |
| Refinement software | REFMAC (5.8.0103) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 40.000 | 1.700 |
| High resolution limit [Å] | 1.660 | 1.660 |
| Number of reflections | 105914 | |
| <I/σ(I)> | 19.8 | 2.5 |
| Completeness [%] | 99.6 | 98.9 |
| Redundancy | 6.2 | 5.2 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | LIQUID DIFFUSION | 293 | tri-potassium citrate, PEG 8000 Crystallisation under micro gravity at ISS Kibo. |
