4WVH
Crystal structure of the Type-I signal peptidase from Staphylococcus aureus (SpsB) in complex with a substrate peptide (pep1).
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
Synchrotron site | Australian Synchrotron |
Beamline | MX1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-06-10 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 0.9537 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 63.661, 80.193, 119.426 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 66.580 - 2.100 |
R-factor | 0.2103 |
Rwork | 0.208 |
R-free | 0.24850 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4wvg |
RMSD bond length | 0.007 |
RMSD bond angle | 1.174 |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 66.580 | 19.770 | 2.160 |
High resolution limit [Å] | 2.100 | 8.910 | 2.100 |
Rmerge | 0.319 | 0.046 | 2.622 |
Rpim | 0.086 | 0.013 | 0.703 |
Total number of observations | 534471 | 6244 | 43560 |
Number of reflections | 36431 | ||
<I/σ(I)> | 10 | 44.4 | 1.6 |
Completeness [%] | 99.9 | 91.4 | 100 |
Redundancy | 12.4 | 14.8 | |
CC(1/2) | 0.994 | 0.999 | 0.589 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | BATCH MODE | 296 | 12 % PEG 8000, 20 % ethylene glycol, 100 mM sodium acetate pH 5.3 - 5.5 |