4WJL
Structure of human dipeptidyl peptidase 10 (DPPY): a modulator of neuronal Kv4 channels
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2008-12-08 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.97943 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 80.910, 143.730, 176.250 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 66.546 - 3.400 |
R-factor | 0.2092 |
Rwork | 0.207 |
R-free | 0.24190 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1xfd |
RMSD bond length | 0.008 |
RMSD bond angle | 1.362 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA (3.3.9) |
Phasing software | PHASER (2.1.4) |
Refinement software | PHENIX ((phenix.refine: 1.7_650)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 111.388 | 66.546 | 3.580 |
High resolution limit [Å] | 3.400 | 10.750 | 3.400 |
Rmerge | 0.053 | 0.775 | |
Rmeas | 0.251 | ||
Rpim | 0.108 | 0.026 | 0.378 |
Total number of observations | 149063 | 4860 | 20630 |
Number of reflections | 29019 | ||
<I/σ(I)> | 6.8 | 18.2 | 2.3 |
Completeness [%] | 99.9 | 99.2 | 99.9 |
Redundancy | 5.1 | 4.8 | 5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | Crystals formed within 2-4 weeks using 100 micrometers of reservoir solution consisting of 20%(w/v) PEG 1500, 0.2 M MgCl2, 0.1 M sodium cacodylate pH 5.5. |