4W9L
pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-((S)-2-acetamido-3,3-dimethylbutanamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 15)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-10-04 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9763 |
Spacegroup name | P 41 2 2 |
Unit cell lengths | 93.825, 93.825, 362.612 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 93.820 - 2.200 |
R-factor | 0.2058 |
Rwork | 0.204 |
R-free | 0.24300 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1vcb |
RMSD bond length | 0.008 |
RMSD bond angle | 1.284 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.21) |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 93.825 | 46.912 | 2.320 |
High resolution limit [Å] | 0.991 | 6.960 | 2.200 |
Rmerge | 0.029 | 0.910 | |
Rmeas | 0.095 | ||
Rpim | 0.035 | 0.014 | 0.388 |
Total number of observations | 533045 | 16688 | 76390 |
Number of reflections | 81578 | ||
<I/σ(I)> | 13.5 | 34.7 | 2.5 |
Completeness [%] | 98.3 | 95.1 | 99.4 |
Redundancy | 6.5 | 6 | 6.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.3 | 291 | PEG 3350, MgOAc, Sodium cacodylate, DTT |