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4UBH

Resting state of rat cysteine dioxygenase Y157F variant

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAUSTRALIAN SYNCHROTRON BEAMLINE MX1
Synchrotron siteAustralian Synchrotron
BeamlineMX1
Temperature [K]93
Detector technologyCCD
Collection date2014-05-03
DetectorADSC QUANTUM 210r
Wavelength(s)0.953700
Spacegroup nameP 43 21 2
Unit cell lengths57.790, 57.790, 121.990
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution25.840 - 1.810
R-factor0.1922
Rwork0.190
R-free0.23250
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4kwj
RMSD bond length0.010
RMSD bond angle0.980
Data reduction softwareMOSFLM
Data scaling softwareAimless (0.3.6)
Phasing softwarePHASER (2.5.6)
Refinement softwarePHENIX ((phenix.refine: 1.9_1692))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]25.84025.8401.850
High resolution limit [Å]1.8108.8701.810
Rmerge0.4640.0690.359
Rpim0.0620.0110.478
Total number of observations1091338835566549
Number of reflections35952
<I/σ(I)>13.746.21.8
Completeness [%]100.096.6100
Redundancy55.63956.8
CC(1/2)0.9971.0000.627
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.3291Hanging drops of 2.5 microL of approximately 24 mg/mL Y157F-CDO (20mM Tris-Cl pH 8.0) and 2.5 microL reservoir buffer containing seeds from wt-CDO were allowed to equilibrate above the reservoir buffer (26% (w/v) polyethylene glycol 4000, 200 mM ammonium acetate, 100 mM sodium citrate).

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PDB entries from 2024-05-15

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