4TXM
Crystal structure of uridine phosphorylase from Schistosoma mansoni in complex with thymine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2011-07-06 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.9136 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 79.361, 84.872, 87.422 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.436 - 1.930 |
R-factor | 0.2163 |
Rwork | 0.214 |
R-free | 0.25190 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4txj |
RMSD bond length | 0.003 |
RMSD bond angle | 0.670 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine: 1.9_1692)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.040 | |
High resolution limit [Å] | 1.930 | 5.750 | 1.930 |
Rmerge | 0.106 | 0.038 | 0.590 |
Rmeas | 0.119 | 0.042 | 0.668 |
Total number of observations | 209662 | ||
Number of reflections | 43916 | 1843 | 6396 |
<I/σ(I)> | 10.1 | 28.29 | 2.44 |
Completeness [%] | 97.1 | 98.6 | 88.8 |
Redundancy | 4.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 291 | 200mM ammonium sulphate, 100mM Bis-Tris pH5.5, 20-25% PEG 3350 |