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4S1Y

X-ray structure of human serum albumin complexed with cisplatin

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Wavelength(s)1.5418
Spacegroup nameP 1 21 1
Unit cell lengths57.789, 86.474, 59.141
Unit cell angles90.00, 103.70, 90.00
Refinement procedure
Resolution57.460 - 3.160
R-factor0.22781
Rwork0.223
R-free0.32943
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)PDB code 1HK1
RMSD bond length0.011
RMSD bond angle1.384
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0049)
Data quality characteristics
 Overall
Low resolution limit [Å]57.460
High resolution limit [Å]3.160
Rmerge0.149
Number of reflections9393
Completeness [%]96.4
Redundancy2.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.4298Crystals of a cisplatin/HSA adduct were obtained by soaking: more in detail, crystals of defatted HSA, grown after four weeks by sitting drop vapour diffusion method at 25 C using a reservoir solution of 30 % w/v polyethylene glycol 3350 in 50 mM potassium phosphate at pH 7.4 and protein concentration of 30 mg mL-1 (see experimental section or further details), were soaked for 24 h in a 0.005 M cisplatin solution in the same reservoir, VAPOR DIFFUSION, SITTING DROP, temperature 298K

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PDB entries from 2024-05-15

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