4ROJ
Crystal Structure of the VAV2 SH2 domain in complex with TXNIP phosphorylated peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2014-01-29 |
Detector | RIGAKU RAXIS |
Wavelength(s) | 1.5418 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 99.764, 99.764, 160.946 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 38.060 - 1.950 |
R-factor | 0.1871 |
Rwork | 0.186 |
R-free | 0.21900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1bmb |
RMSD bond length | 0.016 |
RMSD bond angle | 1.681 |
Data reduction software | XDS |
Data scaling software | Aimless (0.2.17) |
Phasing software | PHASER |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 38.060 | 38.060 | 2.000 |
High resolution limit [Å] | 1.950 | 8.940 | 1.950 |
Rmerge | 0.092 | 0.010 | 0.010 |
Total number of observations | 6971 | 50334 | |
Number of reflections | 35154 | ||
<I/σ(I)> | 25.9 | 60.3 | 3.9 |
Completeness [%] | 99.9 | 98.8 | 99.4 |
Redundancy | 20.7 | 15.3 | 20.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 30% PEG550-MME, 0.1 M ammonium sulfate, 0.1 M cacodylate pH 6.5, vapor diffusion, sitting drop, temperature 293K |