4RIL
Structure of the amyloid forming segment, GAVVTGVTAVA, from the NAC domain of Parkinson's disease protein alpha-synuclein, residues 68-78, determined by electron diffraction
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | ELECTRON MICROSCOPE |
| Source details | TECNAI F20 TEM |
| Temperature [K] | 100 |
| Detector technology | CMOS |
| Collection date | 2014-08-28 |
| Detector | TVIPS F416 CMOS CAMERA |
| Wavelength(s) | 0.0251 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 70.810, 4.820, 16.790 |
| Unit cell angles | 90.00, 105.68, 90.00 |
Refinement procedure
| Resolution | 16.430 - 1.430 |
| R-factor | 0.2512 |
| Rwork | 0.248 |
| R-free | 0.27500 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4rik |
| RMSD bond length | 0.010 |
| RMSD bond angle | 1.650 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.3.11) |
| Phasing software | PHASER (2.5.6) |
| Refinement software | BUSTER-TNT (BUSTER 2.10.0) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 16.430 | 16.430 | 1.600 |
| High resolution limit [Å] | 1.430 | 3.200 | 1.430 |
| Rmerge | 0.175 | 0.080 | 0.565 |
| Total number of observations | 478 | 1245 | |
| Number of reflections | 1073 | ||
| <I/σ(I)> | 5.5 | 13 | 2.5 |
| Completeness [%] | 89.9 | 94 | 82.5 |
| Redundancy | 4.4 | 3.8 | 4.4 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | batch crystallization | 4 | 310 | 1 mg of synthetic peptide GAVVTGVTAVA was dissolved in 1 ml of sterile water and shaken overnight in an orbital mixing plate, pH 4.0, batch crystallization, temperature 310K |






