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4QTF

Structure and specificity of L-D-Transpeptidase from Mycobacterium tuberculosis and antibiotic resistance: Calcium binding promotes dimer formation

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL9-2
Synchrotron siteSSRL
BeamlineBL9-2
Temperature [K]120
Detector technologyCCD
DetectorMAR-325 CCD detector
Wavelength(s)1
Spacegroup nameC 2 2 21
Unit cell lengths57.272, 65.881, 207.456
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution42.350 - 2.000
R-factor0.21522
Rwork0.213
R-free0.25766
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4qr7
RMSD bond length0.019
RMSD bond angle2.162
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwareREFMAC (5.7.0029)
Data quality characteristics
 Overall
Low resolution limit [Å]43.300
High resolution limit [Å]2.000
Number of reflections25603
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2890.03 M citric acid, 0.07 M BIS-TRIS propane pH 7.6 and 20% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 289K

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PDB entries from 2024-05-15

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