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4QLN

structure of ydao riboswitch binding with c-di-dAMP

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-E
Synchrotron siteAPS
Beamline24-ID-E
Temperature [K]100
Spacegroup nameC 2 2 21
Unit cell lengths77.874, 87.051, 144.553
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution45.250 - 2.650
R-factor0.221
Rwork0.217
R-free0.29000
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.015
RMSD bond angle1.820
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX ((phenix.refine: 1.8.4_1496))
Data quality characteristics
 Overall
Low resolution limit [Å]50.000
High resolution limit [Å]2.650
Number of reflections49287
Completeness [%]1.0
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
12930.1 M Na-Bicine, pH 8.7-9.2 and 2.6-3.2 M (NH4)2SO4, VAPOR DIFFUSION, SITTING DROP, temperature 293K

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PDB entries from 2024-05-15

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