Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4PY5

Thermovibrio ammonificans RNase H3 in complex with 19-mer RNA/DNA

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.1
Synchrotron siteBESSY
Beamline14.1
Temperature [K]100
Detector technologyPIXEL
Collection date2013-01-31
DetectorPSI PILATUS 6M
Wavelength(s)0.91841
Spacegroup nameP 21 21 21
Unit cell lengths58.449, 67.661, 107.514
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution42.090 - 2.100
R-factor0.1857
Rwork0.183
R-free0.23300
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.007
RMSD bond angle1.074
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHENIX (AutoSol)
Refinement softwarePHENIX ((phenix.refine: 1.8.1_1168))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.230
High resolution limit [Å]2.1002.100
Rmerge0.0690.564
Number of reflections25396
<I/σ(I)>2.66
Completeness [%]99.395.7
Redundancy4.27
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.52910.2 M AmSO4, 0.1 M BisTris, 25% PEG 3350, 10 mM spermine tetrahydrochloride, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon