4PXZ
Crystal structure of P2Y12 receptor in complex with 2MeSADP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-12-08 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 1.0 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 65.110, 104.170, 169.430 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 28.880 - 2.500 |
R-factor | 0.202 |
Rwork | 0.201 |
R-free | 0.22970 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3VW7 and 1M6T |
RMSD bond length | 0.010 |
RMSD bond angle | 1.030 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.630 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmerge | 0.194 | 0.995 |
Number of reflections | 20345 | |
<I/σ(I)> | 12.4 | 2.3 |
Completeness [%] | 100.0 | 100 |
Redundancy | 16.5 | 8.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Lipidic cubic phase (LCP) | 5 | 293 | 30-40% PEG 400, 0.30-0.45M ammonium acetate, citrate, 3% v/v 1-Propanol, 0.1 M sodium citrate, pH 5.0, Lipidic cubic phase (LCP), temperature 293.0K |
1 | Lipidic cubic phase (LCP) | 5 | 293 | 30-40% PEG 400, 0.30-0.45M ammonium acetate, citrate, 3% v/v 1-Propanol, 0.1 M sodium citrate, pH 5.0, Lipidic cubic phase (LCP), temperature 293.0K |