4PMS
The structure of TrkA kinase bound to the inhibitor 4-naphthalen-1-yl-1-[(5-phenyl-1,2,4-oxadiazol-3-yl)methyl]-1H-pyrrolo[3,2-c]pyridine-2-carboxylic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-04-17 |
Detector | MARMOSAIC 300 mm CCD |
Spacegroup name | P 64 |
Unit cell lengths | 75.780, 75.780, 112.190 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 65.630 - 2.800 |
R-factor | 0.1675 |
Rwork | 0.164 |
R-free | 0.23970 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.130 |
Data reduction software | XDS (0.2.8) |
Refinement software | BUSTER (2.11.4) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 65.630 | 65.630 | 2.950 |
High resolution limit [Å] | 2.800 | 8.860 | 2.800 |
Rmerge | 0.129 | 0.070 | 0.452 |
Rpim | 0.060 | 0.036 | 0.208 |
Total number of observations | 51423 | 1589 | 7515 |
Number of reflections | 9042 | ||
<I/σ(I)> | 13 | 24.8 | 5.1 |
Completeness [%] | 100.0 | 99.8 | 100 |
Redundancy | 5.7 | 5.2 | 5.7 |
CC(1/2) | 0.976 | 0.903 | 0.918 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 277 | 0.1M Bis-Tris, 2.3M AmmoniumAcetate |