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4PLX

Crystal structure of the triple-helical stability element at the 3' end of MALAT1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyPIXEL
Collection date2012-12-15
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.979
Spacegroup nameP 32 2 1
Unit cell lengths162.820, 162.820, 65.930
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution48.200 - 3.100
R-factor0.222
Rwork0.220
R-free0.25500
RMSD bond length0.010
RMSD bond angle1.026
Refinement softwareREFMAC (5.7.0029)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0003.180
High resolution limit [Å]3.1003.100
Number of reflections17565
<I/σ(I)>17.21.28
Completeness [%]99.799.8
Redundancy11.211.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5293Folded RNA was combined with an equal volume of the reservoir solution (50 mM sodium cacodylate pH 6.5, 18 mM magnesium chloride, 2.5 mM spermine and 9% isopropanol)
1VAPOR DIFFUSION, SITTING DROP6.5293Folded RNA was combined with an equal volume of the reservoir solution (50 mM sodium cacodylate pH 6.5, 18 mM magnesium chloride, 2.5 mM spermine and 9% isopropanol)
1VAPOR DIFFUSION, SITTING DROP6.5293Folded RNA was combined with an equal volume of the reservoir solution (50 mM sodium cacodylate pH 6.5, 18 mM magnesium chloride, 2.5 mM spermine and 9% isopropanol)

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PDB entries from 2024-05-15

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