4PHX
Crystal structure of AggB, the minor subunit of aggregative adherence fimbriae type I from the Escherichia coli O4H104
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-06-28 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.98 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 130.797, 163.968, 58.627 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 58.627 - 2.400 |
R-factor | 0.23 |
Rwork | 0.228 |
R-free | 0.27260 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2axw |
RMSD bond length | 0.009 |
RMSD bond angle | 1.352 |
Data scaling software | SCALA (3.3.20) |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine: 1.8.2_1309)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 102.250 | 58.627 | 2.530 |
High resolution limit [Å] | 2.400 | 7.590 | 2.400 |
Rmerge | 0.041 | 0.565 | |
Rmeas | 0.069 | ||
Rpim | 0.030 | 0.021 | 0.262 |
Total number of observations | 261640 | 8037 | 39374 |
Number of reflections | 50214 | ||
<I/σ(I)> | 14.8 | 30.9 | 2.8 |
Completeness [%] | 99.9 | 99.2 | 99.9 |
Redundancy | 5.2 | 4.6 | 5.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 290 | 0.2 M lithium sulfate monohydrate, 0.1 M Tris HCl, pH 8.5, 30% w/v PEG 4000 |