4P6F

Crystal structure of the peptolide 12C bound to bacterial ribosome

This is a non-PDB format compatible entry.

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	APS BEAMLINE 24-ID-C
Synchrotron site	APS
Beamline	24-ID-C
Temperature [K]	100
Detector technology	CCD
Collection date	2010-12-06
Detector	ADSC QUANTUM 315
Wavelength(s)	0.9794
Spacegroup name	P 21 21 21
Unit cell lengths	209.240, 443.460, 618.620
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	49.792 - 3.600
R-factor	0.2237
Rwork	0.222
R-free	0.25420
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	2WDG 2WDH 2WDI 2WDJ
RMSD bond length	0.006
RMSD bond angle	0.887
Data reduction software	HKL-2000
Data scaling software	XSCALE
Refinement software	PHENIX ((phenix.refine: 1.8.3_1479))

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	50.000	3.700
High resolution limit [Å]	3.600	3.600
Rmerge		1.169
Number of reflections	638335
<I/σ(I)>	7.6	1.8
Completeness [%]	98.0	95.8
Redundancy	7.4	6.1

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, SITTING DROP	7	293	3.5-4.5% PEG 20K, 3.5-4.5% PEG550 MME, 0.1M Tris-Acetate, 0.2M KSCN, 10 mM MgCl2
1	VAPOR DIFFUSION, SITTING DROP	7	293	3.5-4.5% PEG 20K, 3.5-4.5% PEG550 MME, 0.1M Tris-Acetate, 0.2M KSCN, 10 mM MgCl2
2	VAPOR DIFFUSION, SITTING DROP	7	293	3.5-4.5% PEG 20K, 3.5-4.5% PEG550 MME, 0.1M Tris-Acetate, 0.2M KSCN, 10 mM MgCl2
2	VAPOR DIFFUSION, SITTING DROP	7	293	3.5-4.5% PEG 20K, 3.5-4.5% PEG550 MME, 0.1M Tris-Acetate, 0.2M KSCN, 10 mM MgCl2