4P0D
The T6 backbone pilin of serotype M6 Streptococcus pyogenes has a modular three-domain structure decorated with variable loops and extensions
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
Synchrotron site | Australian Synchrotron |
Beamline | MX1 |
Temperature [K] | 110 |
Detector technology | CCD |
Collection date | 2013-03-20 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 0.9537 |
Spacegroup name | P 63 |
Unit cell lengths | 104.240, 104.240, 84.220 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 50.000 - 1.900 |
R-factor | 0.2111 |
Rwork | 0.209 |
R-free | 0.24990 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4k8w |
RMSD bond length | 0.008 |
RMSD bond angle | 1.256 |
Data reduction software | XDS (0.2.8) |
Data scaling software | SCALA (2.5.2) |
Phasing software | PHASER (2.5.2) |
Refinement software | REFMAC (5.8.0049) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 24.480 | 24.480 | 1.940 |
High resolution limit [Å] | 1.900 | 8.910 | 1.900 |
Rmerge | 0.152 | 0.051 | 0.939 |
Rpim | 0.036 | 0.012 | 0.229 |
Total number of observations | 665673 | 7733 | 27669 |
Number of reflections | 36565 | ||
<I/σ(I)> | 16.6 | 44.3 | 3.8 |
Completeness [%] | 89.1 | 95.2 | 57.9 |
Redundancy | 18.2 | 19.1 | 17.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.2 | 291 | 2.2 M NaKPO4 pH 6.4, 2 % PEG 400, 0.1 M imidazole, 20 mM Imidazole |