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4OB4

Structure of the S. venezulae BldD DNA-binding domain

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.3.1
Synchrotron siteALS
Beamline8.3.1
Temperature [K]100
Detector technologyCCD
Collection date2013-03-12
DetectorADSC QUANTUM 315r
Wavelength(s)1
Spacegroup nameP 61 2 2
Unit cell lengths79.970, 79.970, 117.400
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution69.256 - 2.800
R-factor0.2363
Rwork0.230
R-free0.29550
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2ewt
RMSD bond length0.010
RMSD bond angle1.165
Data reduction softwareMOSFLM
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwarePHENIX ((phenix.refine: 1.6.4_486))
Data quality characteristics
 Overall
Low resolution limit [Å]69.256
High resolution limit [Å]2.800
Rmerge0.113
Number of reflections5897
<I/σ(I)>12.4
Completeness [%]99.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.529830% PEG 400, 0.1 M MgCl2, Hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K

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PDB entries from 2024-05-15

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