4NS1
Crystal structure of purine nucleoside phosphorylase from Porphyromonas gingivalis ATCC 33277, NYSGRC Target 30972
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | NSLS BEAMLINE X29A |
| Synchrotron site | NSLS |
| Beamline | X29A |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2013-11-16 |
| Detector | ADSC QUANTUM 315 |
| Wavelength(s) | 0.979 |
| Spacegroup name | I 21 3 |
| Unit cell lengths | 218.904, 218.904, 218.904 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 20.000 - 1.640 |
| R-factor | 0.172 |
| Rwork | 0.171 |
| R-free | 0.18620 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4lna |
| RMSD bond length | 0.008 |
| RMSD bond angle | 1.250 |
| Data reduction software | HKL-3000 |
| Data scaling software | SCALEPACK |
| Phasing software | PHASER (2.5.1) |
| Refinement software | REFMAC |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 50.000 | 50.000 | 1.670 |
| High resolution limit [Å] | 1.640 | 4.450 | 1.640 |
| Rmerge | 0.087 | 0.026 | 0.844 |
| Number of reflections | 210759 | ||
| <I/σ(I)> | 9.6 | ||
| Completeness [%] | 99.8 | 99.4 | 99.6 |
| Redundancy | 4.9 | 4.9 | 4.2 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 298 | Crystallization - MCSG1-A5: 0.2 M sodium chloride, 0.1 M sodium acetete/acetic acid, pH 4.5, 1.26 M ammonium sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 298K |






