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4MW6

Trypanosoma brucei methionyl-tRNA synthetase in complex with inhibitor 1-(3-{[2-(benzyloxy)-5-chloro-3-(prop-2-en-1-yl)benzyl]amino}propyl)-3-thiophen-3-ylurea (Chem 1476)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL12-2
Synchrotron siteSSRL
BeamlineBL12-2
Temperature [K]100
Detector technologyPIXEL
Collection date2011-05-20
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.98
Spacegroup nameP 21 21 21
Unit cell lengths87.277, 106.135, 207.057
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution30.000 - 2.558
R-factor0.2028
Rwork0.201
R-free0.24120
Structure solution methodRIGID BODY REFINEMENT OF ISOMORPHOUS STRUCTURE
Starting model (for MR)4eg8
RMSD bond length0.008
RMSD bond angle1.160
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Refinement softwareREFMAC (refmac_5.7.0032)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.590
High resolution limit [Å]2.5502.550
Rmerge0.1430.732
Number of reflections62498
<I/σ(I)>51.952
Completeness [%]99.697.5
Redundancy6.45.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2982.0-2.3 M ammonium sulfate, 0.2 M sodium chloride, 0.1 M sodium cacodylate, pH 6.0-6.8, VAPOR DIFFUSION, SITTING DROP, temperature 298K

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