4MCB
H.influenzae TrmD in complex with N-(4-{[(1H-IMIDAZOL-2-YLMETHYL)AMINO]METHYL}BENZYL)-4-OXO-3,4-DIHYDROTHIENO[2,3-D]PYRIMIDINE-5-CARBOXAMIDE
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E+ SUPERBRIGHT |
Temperature [K] | 140 |
Detector technology | CCD |
Collection date | 2012-02-10 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.54178 |
Spacegroup name | P 41 |
Unit cell lengths | 74.158, 74.158, 119.288 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.800 - 1.940 |
R-factor | 0.1796 |
Rwork | 0.178 |
R-free | 0.20540 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.010 |
RMSD bond angle | 1.050 |
Data reduction software | PROCESS |
Data scaling software | SCALA (3.3.20) |
Phasing software | AMoRE |
Refinement software | BUSTER-TNT (BUSTER 2.11.5) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 119.288 | 119.288 | 2.040 |
High resolution limit [Å] | 1.936 | 6.120 | 1.940 |
Rmerge | 0.021 | 0.397 | |
Total number of observations | 6357 | 27971 | |
Number of reflections | 47863 | ||
<I/σ(I)> | 15.6 | 24.8 | 2 |
Completeness [%] | 99.9 | 99.3 | 100 |
Redundancy | 4.1 | 4.1 | 4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 293 | Protein at 10 mg/mL in the buffer: 20mM Tris pH 8.0, 150 mM NaCl, 10% Glycerol, 1mM DTT, 1mM EDTA. mixed 1:1 with well solution containing: 200 mM CaAcetate, 24% PEG 400, 100 mM Sodium Acetate, VAPOR DIFFUSION, SITTING DROP, temperature 293K |