4M0K
Crystal structure of adenine phosphoribosyltransferase from Rhodothermus marinus DSM 4252, NYSGRC Target 029775.
Experimental procedure
Experimental method | SAD |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-07-18 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 0.9791 |
Spacegroup name | P 1 |
Unit cell lengths | 40.214, 64.609, 73.148 |
Unit cell angles | 87.30, 77.23, 85.37 |
Refinement procedure
Resolution | 20.000 - 1.400 |
R-factor | 0.185 |
Rwork | 0.184 |
R-free | 0.20950 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2dy0 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.406 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER (2.5.1) |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.420 |
High resolution limit [Å] | 1.400 | 3.800 | 1.400 |
Rmerge | 0.070 | 0.053 | 0.667 |
Number of reflections | 135383 | ||
<I/σ(I)> | 12.7 | ||
Completeness [%] | 95.9 | 97.5 | 93 |
Redundancy | 3.8 | 3.8 | 3.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 298 | 0.2 M calcium chloride, 0.1 M HEPES:NAOH, pH 7.5, 30% PEG 4000, VAPOR DIFFUSION, SITTING DROP, temperature 298K |