Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

4LY8

dihydrodipicolinate synthase from C. jejuni with pyruvate bound to the active site

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCLSI BEAMLINE 08B1-1
Synchrotron siteCLSI
Beamline08B1-1
Detector technologyCCD
Collection date2012-07-12
DetectorRAYONIX MX300HE
Wavelength(s)0.9796
Spacegroup nameP 21 21 21
Unit cell lengths81.254, 101.404, 147.960
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution43.010 - 1.700
R-factor0.2114
Rwork0.209
R-free0.25550
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4ly8
RMSD bond length0.006
RMSD bond angle1.112
Data reduction softwared*TREK (9.9.9.4L)
Data scaling softwared*TREK (9.9.9.4L)
Phasing softwareMOLREP
Refinement softwarePHENIX (dev_1327)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]43.01043.0101.660
High resolution limit [Å]1.6003.4501.600
Rmerge0.1290.0640.541
Total number of observations12257854428
Number of reflections158522
<I/σ(I)>5.817.21.5
Completeness [%]98.399.289.1
Redundancy5.597.192.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8.528718% PEG4000, 0.25 mM sodium acetate, 0.1 mM TRIS, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 287K

245663

PDB entries from 2025-12-03

PDB statisticsPDBj update infoContact PDBjnumon