4LNH
Crystal structure of uridine phosphorylase from Vibrio fischeri ES114, NYSGRC Target 29520.
Experimental procedure
Experimental method | SAD |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X29A |
Synchrotron site | NSLS |
Beamline | X29A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-04-12 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9791 |
Spacegroup name | H 3 2 |
Unit cell lengths | 164.732, 164.732, 58.168 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 31.130 - 2.300 |
R-factor | 0.1719 |
Rwork | 0.170 |
R-free | 0.21240 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3qpb |
RMSD bond length | 0.009 |
RMSD bond angle | 1.331 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.340 |
High resolution limit [Å] | 2.300 | 6.240 | 2.300 |
Rmerge | 0.073 | 0.056 | 0.713 |
Number of reflections | 13419 | ||
<I/σ(I)> | 12.7 | ||
Completeness [%] | 99.4 | 95.5 | 100 |
Redundancy | 11 | 10.1 | 11.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 298 | 0.2 M ammonium sulfate, 0.1 M HEPES:NaOH, pH 8.5, 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 298K |