4KY8
Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, methotrexate, FdUMP and 4-((2-amino-6-methyl-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)thio)-2-chlorophenyl)-L-glutamic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X25 |
Synchrotron site | NSLS |
Beamline | X25 |
Temperature [K] | 77 |
Detector technology | PIXEL |
Collection date | 2013-04-16 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.10 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 214.162, 115.665, 218.767 |
Unit cell angles | 90.00, 94.36, 90.00 |
Refinement procedure
Resolution | 48.120 - 3.084 |
R-factor | 0.233 |
Rwork | 0.232 |
R-free | 0.26630 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1qzf |
RMSD bond length | 0.002 |
RMSD bond angle | 0.543 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.1_1168) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.120 | 50.000 | 3.150 |
High resolution limit [Å] | 3.080 | 8.400 | 3.100 |
Rmerge | 0.207 | ||
Number of reflections | 70173 | ||
<I/σ(I)> | 4.1 | ||
Completeness [%] | 71.6 | 99.8 | 11.3 |
Redundancy | 3 | 3.3 | 1.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 298 | 14% (w/v) PEG 6000, 60 mM ammonium sulfate, 200 mM lithium sulfate and 100 mM Tris pH 8.0. ChTS-DHFR enzyme (~ 7 mg/ml) with 1 mM NADPH, 1 mM MTX, 1 mM FdUMP and 0.5 mM inhibitor., VAPOR DIFFUSION, HANGING DROP, temperature 298K |