4KTO
Crystal Structure Of a Putative Isovaleryl-CoA dehydrogenase (PSI-NYSGRC-012251) from Sinorhizobium meliloti 1021
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-03-18 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 0.97931 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 89.912, 115.158, 143.619 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 31.776 - 2.137 |
R-factor | 0.1776 |
Rwork | 0.175 |
R-free | 0.22600 |
Structure solution method | SAD |
Starting model (for MR) | 1ivh |
RMSD bond length | 0.008 |
RMSD bond angle | 1.198 |
Data reduction software | HKL-3000 |
Data scaling software | SCALEPACK |
Phasing software | PHENIX (1.8.2_1309) |
Refinement software | PHENIX (1.8.2_1309) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.190 |
High resolution limit [Å] | 2.137 | 5.830 | 2.150 |
Rmerge | 0.129 | 0.060 | |
Number of reflections | 79333 | ||
<I/σ(I)> | 18.09 | ||
Completeness [%] | 96.9 | 98.5 | 96.4 |
Redundancy | 6.2 | 6.8 | 5.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 298 | Protein (20 mM Hepes, pH 7.5, 150 mM NaCl, 10% glycerol, 5mM DTT); Reservoir (0.17M Sodium Acetate, 0.085M Tris, 25.5% PEG4000, 15% (v/v) Glycerol)pH 8.5 - MCSG1 #20); Cryoprotection (Paratone-N), Sitting Drop, Vapor Diffusion, temperature 298K, VAPOR DIFFUSION, SITTING DROP |