4JTG
Crystal structure of F114R/R117A mutant of 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8PS) from Neisseria meningitidis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
Synchrotron site | Australian Synchrotron |
Beamline | MX1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-09-01 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 0.95368 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 81.590, 85.370, 163.350 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.576 - 1.850 |
R-factor | 0.1624 |
Rwork | 0.161 |
R-free | 0.19090 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2qkf |
RMSD bond length | 0.020 |
RMSD bond angle | 1.895 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.3.15) |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 33.576 | 33.576 | 1.950 |
High resolution limit [Å] | 1.850 | 5.850 | 1.850 |
Rmerge | 0.032 | 0.412 | |
Total number of observations | 21352 | 97126 | |
Number of reflections | 95642 | ||
<I/σ(I)> | 20.7 | 16.5 | 1.9 |
Completeness [%] | 97.9 | 98.6 | 96.8 |
Redundancy | 7.4 | 6.5 | 7.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.6 | 297 | 20 mg/mL protein (in 10 mM BTP pH 7.5) mixed 1:1 with reservoir liquor containing 100 mM NaOAc (pH 4.6) and 1.6 M NaCl. Immediately prior to data collection, crystals were harvested and soaked briefly in cryoprotectant solution, comprising 20% glycerol and the reservoir solution, Vapor diffusion, hanging drop, temperature 297K |