Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4J5D

Human Cyclophilin D Complexed with an Inhibitor

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID14-1
Synchrotron siteESRF
BeamlineID14-1
Temperature [K]100
Detector technologyCCD
Collection date2010-12-19
DetectorADSC QUANTUM 210
Wavelength(s)0.93340
Spacegroup nameP 41 21 2
Unit cell lengths56.590, 56.590, 87.220
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution28.295 - 1.320
R-factor0.1249
Rwork0.123
R-free0.16250
Structure solution methodIsomorphous Replacement
RMSD bond length0.009
RMSD bond angle1.277
Data reduction softwareMOSFLM
Data scaling softwareSCALA (3.2.19)
Refinement softwarePHENIX (1.8_1069)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]28.29628.2961.390
High resolution limit [Å]1.3204.1701.320
Rmerge0.0700.0270.493
Total number of observations99458809
Number of reflections32346
<I/σ(I)>15.621.31.6
Completeness [%]94.899.773.5
Redundancy7.38.12.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.329130% PEG4000, pH 7.3, vapor diffusion, hanging drop, temperature 291.0K

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon