4IVP
Crystal structure of thymidine kinase from herpes simplex virus type 1 in complex with IN51/20
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2012-02-11 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.0 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 114.001, 117.827, 108.300 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.868 - 2.100 |
R-factor | 0.1796 |
Rwork | 0.178 |
R-free | 0.21380 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3f0t |
RMSD bond length | 0.008 |
RMSD bond angle | 1.091 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine: 1.8.1_1168)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.870 | 2.210 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.082 | 0.319 |
Number of reflections | 42825 | |
<I/σ(I)> | 19.2 | 0.075 |
Completeness [%] | 100.0 | 100 |
Redundancy | 11 | 0.117 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 296 | 0.9-1.2 M lithium sulfate, 1 mM DTT, 0.1 M HEPES, pH 7.5-8.0, VAPOR DIFFUSION, SITTING DROP, temperature 296K |