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4IRV

Structure of the Helicobacter pylori CagA Oncogene Bound to the Human Tumor Suppressor Apoptosis-stimulating Protein of p53-2

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X29A
Synchrotron siteNSLS
BeamlineX29A
Detector technologyCCD
DetectorADSC QUANTUM 315
Wavelength(s)0.97869
Spacegroup nameC 1 2 1
Unit cell lengths118.641, 120.239, 100.659
Unit cell angles90.00, 115.64, 90.00
Refinement procedure
Resolution90.750 - 2.040
R-factor0.19148
Rwork0.189
R-free0.23410
Structure solution methodSAD
RMSD bond length0.019
RMSD bond angle1.909
Refinement softwareREFMAC (5.7.0029)
Data quality characteristics
 Overall
Low resolution limit [Å]90.750
High resolution limit [Å]2.040
Number of reflections80050
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8.5Crystals were grown by vapor diffusion at 25 degrees C using hanging drops formed from mixing a 2ul of the protein complex with 2ul of an equilibration buffer (21% polyethylene glycol (PEG) molecular weight 4 kDa, 200 mM Li2 SO4 , and 100 mM Tris pH 8.5) and 0.6ul of the Silver Bullets additive 43 (Hampton Research HR2-996-43). Significantly higher quality crystals were obtained from selenomethionine-substituted protein complexes and they were used for the final refinement, VAPOR DIFFUSION, HANGING DROP

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PDB entries from 2024-05-15

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