4HZA
Crystal Structure of the Immunoglobulin variable domain of Nectin-2 in monoclinic form
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | NSLS BEAMLINE X29A |
| Synchrotron site | NSLS |
| Beamline | X29A |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2012-06-08 |
| Detector | ADSC QUANTUM 315 |
| Wavelength(s) | 0.9793 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 51.907, 49.261, 51.867 |
| Unit cell angles | 90.00, 116.98, 90.00 |
Refinement procedure
| Resolution | 40.000 - 1.700 |
| R-factor | 0.1884 |
| Rwork | 0.186 |
| R-free | 0.22590 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 3ron |
| RMSD bond length | 0.024 |
| RMSD bond angle | 2.087 |
| Data reduction software | HKL-2000 |
| Data scaling software | SCALEPACK |
| Phasing software | MOLREP |
| Refinement software | REFMAC |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 40.000 | 40.000 | 1.730 |
| High resolution limit [Å] | 1.700 | 4.610 | 1.700 |
| Rmerge | 0.060 | 0.030 | 0.525 |
| Number of reflections | 25886 | ||
| <I/σ(I)> | 22 | ||
| Completeness [%] | 100.0 | 99.6 | 100 |
| Redundancy | 4.3 | 4.2 | 4.2 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 298 | 0.2M NaCl, 0.1M BIS-TRIS pH 5.5, 25% PEG 4K, Vapor diffusion, Sitting drop, temperature 298K |
