4HCY
Structure of a eukaryotic thiaminase-I bound to the thiamin analogue 3-deazathiamin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 14-BM-C |
Synchrotron site | APS |
Beamline | 14-BM-C |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2004-11-18 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.90 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 104.090, 201.860, 305.240 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.090 - 2.750 |
R-factor | 0.2334 |
Rwork | 0.232 |
R-free | 0.26730 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 4hcw |
RMSD bond length | 0.002 |
RMSD bond angle | 0.669 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHENIX |
Refinement software | PHENIX ((phenix.refine: 1.7.3_928)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.090 | 2.850 |
High resolution limit [Å] | 2.750 | 2.750 |
Rmerge | 0.098 | |
Number of reflections | 82491 | |
<I/σ(I)> | 2.3 | |
Completeness [%] | 98.5 | 95.3 |
Redundancy | 11.4 | 11.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 1.7 M ammonium sulfate, 15% (v/v) glycerol, 1.7% (v/v) PEG 400, 85 mM HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K |