4H49
Crystal structure of the catalytic domain of MMP-12 in complex with a twin inhibitor.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 1 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2012-07-04 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.98011 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 47.440, 106.490, 65.880 |
Unit cell angles | 90.00, 94.96, 90.00 |
Refinement procedure
Resolution | 47.262 - 2.160 |
R-factor | 0.1703 |
Rwork | 0.167 |
R-free | 0.24070 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4h30 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.104 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | MOLREP |
Refinement software | PHENIX ((phenix.refine: 1.8_1069)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.290 |
High resolution limit [Å] | 2.160 | 6.420 | 2.160 |
Rmerge | 0.112 | 0.049 | 0.696 |
Number of reflections | 34818 | ||
<I/σ(I)> | 12.21 | 32.67 | 2.6 |
Completeness [%] | 99.3 | 99.6 | 96 |
Redundancy | 5.63 | 5.4 | 5.46 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 293 | Protein: hMMP12 F171D 0.78 milli-M + 0.010 M AHA. Reservoir: 17% PEG 20.000, 0.2 M imidazole malate, pH 6.0, 0.25 M NaCl. Cryoprotectant: 10% di-ethylene glycol + 10% glycerol + 10% 1,2-propanediol, 25% M PEG 5.000, 0.1 M BES pH 5.5., VAPOR DIFFUSION, SITTING DROP, temperature 293K |