4FQF
Crystal structure of a thionitrate intermediate of human aldehyde dehydrogenase-2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | EMBL/DESY, HAMBURG BEAMLINE X13 |
Synchrotron site | EMBL/DESY, HAMBURG |
Beamline | X13 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-10-30 |
Detector | MAR CCD 165 mm |
Wavelength(s) | 0.81230 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 136.862, 148.431, 176.005 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.802 - 2.281 |
R-factor | 0.1719 |
Rwork | 0.170 |
R-free | 0.20920 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1o05 |
RMSD bond length | 0.012 |
RMSD bond angle | 0.889 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine: 1.7.3_928)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 19.830 | 2.390 |
High resolution limit [Å] | 2.281 | 2.280 |
Rmerge | 0.082 | 0.295 |
Number of reflections | 81819 | |
<I/σ(I)> | 14.5 | 5.7 |
Completeness [%] | 99.1 | 99.9 |
Redundancy | 6.4 | 6.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.4 | 293 | 100 mM bis(2-hydroxyethyl)amino-tris(hydroxymethyl)methane (Bis-TRIS), 25% PEG 3350, 60 mM urea; 13.3 mM magnesium chloride, 8.9 mM tris(2-carboxyethyl)phosphine (TCEP), 4.4 mM NAD+, 45.8 mM glucose, crystals have been soaked with glyceryl trinitrate (GTN), pH 6.4, VAPOR DIFFUSION, SITTING DROP, temperature 293K |