4DZ3
Crystal structure of a Peptidyl-prolyl cis-trans isomerase with surface mutation M61H from Burkholderia pseudomallei complexed with FK506
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-02-03 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.978720 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 48.980, 106.580, 107.160 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.720 - 2.000 |
R-factor | 0.193 |
Rwork | 0.192 |
R-free | 0.21900 |
Structure solution method | MR |
Starting model (for MR) | 3vaw |
RMSD bond length | 0.015 |
RMSD bond angle | 1.518 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.6.0117) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.720 | 2.050 | |
High resolution limit [Å] | 2.000 | 8.940 | 2.000 |
Rmerge | 0.090 | 0.021 | 0.503 |
Number of reflections | 19388 | 252 | 1407 |
<I/σ(I)> | 14.17 | 38.9 | 3.3 |
Completeness [%] | 99.9 | 96.6 | 100 |
Redundancy | 4.87 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 290 | Internal tracking number 226597. JCSG well D10. 0.1M Cacodylate pH 6.5, 200mM Calcium Acetate, 30.0% w/v PEG400, 20% Ethylene Glycol Cryo. BupsA.00130.a.D227 PD00193 25.2mg/ml., vapor diffusion, sitting drop, temperature 290K |