4DOB
Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-monochlororomethylene triphosphate: Stereoselective binding of R-isomer
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Detector technology | CCD |
Collection date | 2011-09-08 |
Detector | RIGAKU SATURN 92 |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 50.601, 80.403, 55.634 |
Unit cell angles | 90.00, 107.72, 90.00 |
Refinement procedure
Resolution | 21.360 - 2.050 |
R-factor | 0.209 |
Rwork | 0.205 |
R-free | 0.26300 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3jpo |
RMSD bond length | 0.014 |
RMSD bond angle | 1.491 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX ((phenix.refine: 1.7.2_869)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.120 |
High resolution limit [Å] | 2.048 | 2.050 |
Rmerge | 0.080 | 0.368 |
Number of reflections | 24826 | |
<I/σ(I)> | 13.5 | 2.5 |
Completeness [%] | 92.7 | 62.5 |
Redundancy | 3.5 | 2.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 291 | 50 mM Imidazole, pH 7.5 350 mM Sodium Acetate 18 % PEG3350 , VAPOR DIFFUSION, SITTING DROP, temperature 291K |