4DJH
Structure of the human kappa opioid receptor in complex with JDTic
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2011-12-10 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.0330 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 54.896, 147.297, 205.288 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.861 - 2.900 |
R-factor | 0.2285 |
Rwork | 0.227 |
R-free | 0.26460 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | poly Ala model of PDB entry 3ODU. ensemble of T4L models from PDB entries 2RH1 3eml 3odu 3pbl and 3RZE. |
RMSD bond length | 0.005 |
RMSD bond angle | 0.767 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine: 1.7.3_928)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.000 |
High resolution limit [Å] | 2.900 | 2.900 |
Rmerge | 0.180 | 0.950 |
Number of reflections | 38323 | |
<I/σ(I)> | 12.6 | 1.3 |
Completeness [%] | 97.1 | 87.5 |
Redundancy | 5.6 | 3.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIPIDIC CUBIC PHASE | 6 | 293 | 100 mM sodium citrate pH 6.0, 30% (v/v) PEG400, 400 mM potassium nitrate, lipidic cubic phase, temperature 293K |