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4DJH

Structure of the human kappa opioid receptor in complex with JDTic

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-D
Synchrotron siteAPS
Beamline23-ID-D
Temperature [K]100
Detector technologyCCD
Collection date2011-12-10
DetectorMARMOSAIC 300 mm CCD
Wavelength(s)1.0330
Spacegroup nameP 21 21 21
Unit cell lengths54.896, 147.297, 205.288
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution35.861 - 2.900
R-factor0.2285
Rwork0.227
R-free0.26460
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)poly Ala model of PDB entry 3ODU. ensemble of T4L models from PDB entries 2RH1 3eml 3odu 3pbl and 3RZE.
RMSD bond length0.005
RMSD bond angle0.767
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX ((phenix.refine: 1.7.3_928))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0003.000
High resolution limit [Å]2.9002.900
Rmerge0.1800.950
Number of reflections38323
<I/σ(I)>12.61.3
Completeness [%]97.187.5
Redundancy5.63.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1LIPIDIC CUBIC PHASE6293100 mM sodium citrate pH 6.0, 30% (v/v) PEG400, 400 mM potassium nitrate, lipidic cubic phase, temperature 293K

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