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4DA6

Crystal structure of the hexameric purine nucleoside phosphorylase from Bacillus subtilis in complex with ganciclovir

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsLNLS BEAMLINE W01B-MX2
Synchrotron siteLNLS
BeamlineW01B-MX2
Temperature [K]100
Detector technologyCCD
DetectorMARMOSAIC 225 mm CCD
Spacegroup nameP 63 2 2
Unit cell lengths135.551, 135.551, 57.772
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution41.170 - 1.700
R-factor0.1788
Rwork0.178
R-free0.20390
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.014
RMSD bond angle1.473
Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Phasing softwareMOLREP
Refinement softwareREFMAC
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.760
High resolution limit [Å]1.7003.6601.700
Rmerge0.0660.0500.455
Number of reflections34286
<I/σ(I)>16.8
Completeness [%]98.493.798.3
Redundancy8.89.44.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION4.62910.1 M sodium acetate, 3.2 M sodium chloride, 5%(v/v) glycerol, pH 4.6, vapor diffusion, temperature 291K

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PDB entries from 2026-04-01

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