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4D6D

Crystal structure of a family 98 glycoside hydrolase catalytic module (Sp3GH98) in complex with the blood group A-trisaccharide (X02 mutant)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCLSI BEAMLINE 08B1-1
Synchrotron siteCLSI
Beamline08B1-1
Temperature [K]100
Detector technologyCCD
DetectorMARRESEARCH
Spacegroup nameC 2 2 21
Unit cell lengths92.350, 154.300, 96.700
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution48.350 - 1.520
R-factor0.1279
Rwork0.126
R-free0.15601
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2wmi
RMSD bond length0.011
RMSD bond angle1.615
Data reduction softwareMOSFLM
Data scaling softwareAimless
Refinement softwareREFMAC (5.5.0109)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.1301.600
High resolution limit [Å]1.5201.520
Rmerge0.1400.490
Number of reflections105928
<I/σ(I)>10.14.1
Completeness [%]100.0100
Redundancy7.47.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
115% PEG 3350, 0.2M AMMONIUM SULFATE, 0.1M SODIUM ACETATE TRIHYDRATE PH 4.8

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PDB entries from 2025-06-11

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