Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4BRR

Crystal structure of the integral membrane diacylglycerol kinase - delta 7.79

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06DA
Synchrotron siteSLS
BeamlineX06DA
Temperature [K]100
Detector technologyPIXEL
Collection date2013-02-06
DetectorDECTRIS PILATUS 6M
Spacegroup nameP 21 21 21
Unit cell lengths75.060, 91.500, 143.720
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution66.533 - 2.440
R-factor0.2195
Rwork0.218
R-free0.25220
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3ze3
RMSD bond length0.007
RMSD bond angle0.688
Data reduction softwareXDS
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwarePHENIX ((PHENIX.REFINE))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]75.0602.500
High resolution limit [Å]2.4402.440
Rmerge0.0801.030
Number of reflections37160
<I/σ(I)>8.62.1
Completeness [%]99.099.4
Redundancy3.33.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1LIPIDIC CUBIC PHASE5.62774-6 %(V/V) 2-METHYL-2, 4-PENTANEDIOL (MPD), 0.1 M SODIUM CHLORIDE, 60 MM MAGNESIUM ACETATE, 0.1 M SODIUM CITRATE/HCL PH 5.6. CRYSTALLIZED USING THE IN MESO (LIPIDIC CUBIC PHASE) METHOD AT 4 DEGREES CELCIUS WITH THE 7.9 MONOACYLGLYCEROL (7.9 MAG) AS THE HOSTING LIPID.

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon