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4B5T

Crystal structures of divalent metal dependent pyruvate aldolase, HpaI, in complex with ketobutyrate

Experimental procedure
Experimental methodMAD
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X25
Synchrotron siteNSLS
BeamlineX25
Temperature [K]100
Detector technologyCCD
DetectorADSC QUANTUM 315
Spacegroup nameP 21 3
Unit cell lengths151.327, 151.327, 151.327
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution37.832 - 1.923
R-factor0.1579
Rwork0.155
R-free0.18560
Structure solution methodMAD
Starting model (for MR)2v5j
RMSD bond length0.011
RMSD bond angle1.324
Phasing softwarePHENIX
Refinement softwarePHENIX ((PHENIX.REFINE))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]47.8002.030
High resolution limit [Å]1.9201.920
Rmerge0.0300.240
Number of reflections87457
<I/σ(I)>12.92.8
Completeness [%]99.798.1
Redundancy23.64.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
10.5 M AMMONIUM DIHYDROGEN PHOSPHATE, 30% GLYCEROL, 2 MM COCL2 PH 5

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PDB entries from 2025-06-18

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