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485D

A SULFATE POCKET FORMED BY THREE GOU PAIRS IN THE STRUCTURE OF A NONAMERIC RNA

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE BM14
Synchrotron siteESRF
BeamlineBM14
Temperature [K]110
Detector technologyAREA DETECTOR
Spacegroup nameH 3
Unit cell lengths39.958, 39.958, 67.445
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution20.000 - 0.970
R-factor0.1503
Rwork0.149
R-free0.19540
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.014
RMSD bond angle0.018
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareAMoRE
Refinement softwareSHELXL-97
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0000.990
High resolution limit [Å]0.9700.970
Rmerge0.0410.446
Total number of observations140902

*

Number of reflections23838
Completeness [%]99.899.9
Redundancy5.912.63
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP63102.2-2.6 M AMMONIUM SULFATE, 5-50 MM MAGNESIUM SULFATE, 50 MM SODIUM CACODYLATE, 1MM SPERMINE, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 310K
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111(NH4)2SO4
211MGSO4
311SODIUM CACODYLATE,
411SPERMINE
512(NH4)2SO4
612MGSO4
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropRNA10 (mg/ml)
21drop5 (mM)
31dropsodium cacodylate10 (mM)
41reservoirammonium sulfate2.2-2.6 (M)
51reservoirsodium cacodylate50 (mM)
61reservoirspermine1 (mM)

223790

PDB entries from 2024-08-14

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