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481D

CRYSTAL STRUCTURE OF A HEXITOL NUCLEIC ACID (HNA) DUPLEX AT 1.6A RESOLUTION

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsEMBL/DESY, HAMBURG BEAMLINE BW7B
Synchrotron siteEMBL/DESY, HAMBURG
BeamlineBW7B
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date1998-10-22
DetectorMARRESEARCH
Spacegroup nameP 32 1 2
Unit cell lengths33.041, 33.041, 38.924
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution20.000 - 1.600
R-factor0.174

*

R-free0.22900

*

Starting model (for MR)2.21A P 62 2 2 STRUCTURE OF H(GTGTACAC) (NDB CODE HD0002) WAS USED AS MODEL
RMSD bond length0.013
RMSD bond angle0.019
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareBRUTE
Refinement softwareSHELXL-97
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0001.630
High resolution limit [Å]1.6001.600
Rmerge0.0710.173
Number of reflections3345
<I/σ(I)>13.26.6
Completeness [%]99.9100
Redundancy8.54.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7277

*

CRYSTALS WERE OBTAINED FROM A SOLUTION THAT CONTAINED CACODYLATE BUFFER, KCL, BACL2, SPERMINE TETRACHLORIDE, AND MPD, pH 7.0, VAPOR DIFFUSION, HANGING DROP
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111CACODYLATE BUFFER
211KCL
311BACL2
411SPERMINE
511MPD
612MPD
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropoligomer solution2.4 (mM)
21dropMPD10 (%(v/v))
31dropspermine hydrochloride12 (mM)
41drop80 (mM)
51drop20 (mM)
61dropcacodylate40 (mM)pH7.0
71reservoirMPD35 (%(v/v))

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