481D
CRYSTAL STRUCTURE OF A HEXITOL NUCLEIC ACID (HNA) DUPLEX AT 1.6A RESOLUTION
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | EMBL/DESY, HAMBURG BEAMLINE BW7B |
Synchrotron site | EMBL/DESY, HAMBURG |
Beamline | BW7B |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 1998-10-22 |
Detector | MARRESEARCH |
Spacegroup name | P 32 1 2 |
Unit cell lengths | 33.041, 33.041, 38.924 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 20.000 - 1.600 |
R-factor | 0.174 * |
R-free | 0.22900 * |
Starting model (for MR) | 2.21A P 62 2 2 STRUCTURE OF H(GTGTACAC) (NDB CODE HD0002) WAS USED AS MODEL |
RMSD bond length | 0.013 |
RMSD bond angle | 0.019 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | BRUTE |
Refinement software | SHELXL-97 |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 1.630 |
High resolution limit [Å] | 1.600 | 1.600 |
Rmerge | 0.071 | 0.173 |
Number of reflections | 3345 | |
<I/σ(I)> | 13.2 | 6.6 |
Completeness [%] | 99.9 | 100 |
Redundancy | 8.5 | 4.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 277 * | CRYSTALS WERE OBTAINED FROM A SOLUTION THAT CONTAINED CACODYLATE BUFFER, KCL, BACL2, SPERMINE TETRACHLORIDE, AND MPD, pH 7.0, VAPOR DIFFUSION, HANGING DROP |
Crystallization Reagents
ID | crystal ID | solution ID | reagent name | concentration | details |
1 | 1 | 1 | CACODYLATE BUFFER | ||
2 | 1 | 1 | KCL | ||
3 | 1 | 1 | BACL2 | ||
4 | 1 | 1 | SPERMINE | ||
5 | 1 | 1 | MPD | ||
6 | 1 | 2 | MPD |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | oligomer solution | 2.4 (mM) | |
2 | 1 | drop | MPD | 10 (%(v/v)) | |
3 | 1 | drop | spermine hydrochloride | 12 (mM) | |
4 | 1 | drop | 80 (mM) | ||
5 | 1 | drop | 20 (mM) | ||
6 | 1 | drop | cacodylate | 40 (mM) | pH7.0 |
7 | 1 | reservoir | MPD | 35 (%(v/v)) |