425D
5'-D(*AP*CP*CP*GP*GP*TP*AP*CP*CP*GP*GP*T)-3'
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | ROTATING ANODE |
| Source details | RIGAKU RU300 |
| Temperature [K] | 120 |
| Detector technology | AREA DETECTOR |
| Collection date | 1995-03-10 |
| Detector | XENTRONICS |
| Spacegroup name | P 43 |
| Unit cell lengths | 40.207, 40.207, 57.575 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 25.500 - 2.800 |
| R-factor | 0.219 |
| Rwork | 0.219 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | IDEAL B-DNA |
| RMSD bond length | 0.010 |
| RMSD bond angle | 16.900 * |
| Data reduction software | XDS |
| Data scaling software | XDS |
| Phasing software | ULTIMA |
| Refinement software | X-PLOR (3.1) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 25.500 | 2.900 |
| High resolution limit [Å] | 2.800 | 2.800 |
| Rmerge | 0.056 | 0.210 |
| Total number of observations | 13447 * | |
| Number of reflections | 2243 | 2164 * |
| Completeness [%] | 97.5 | 86.8 * |
| Redundancy | 6 | 2.7 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | Vapor diffusion * | 7 | 4 * | pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K |
Crystallization Reagents
| ID | crystal ID | solution ID | reagent name | concentration | details |
| 1 | 1 | 1 | MGCL2 | ||
| 2 | 1 | 1 | MNCL2 | ||
| 3 | 1 | 1 | SPERMINE | ||
| 4 | 1 | 1 | SODIUM CACODYLATE | ||
| 5 | 1 | 1 | MPD | ||
| 6 | 1 | 2 | SODIUM CACODYLATE | ||
| 7 | 1 | 2 | MPD |
Crystallization Reagents in Literatures
| ID | crystal ID | solution | reagent name | concentration (unit) | details |
| 1 | 1 | drop | DNA | 2 (mg/ml) | |
| 2 | 1 | drop | 32 (mM) | ||
| 3 | 1 | drop | 3-10 (mM) | ||
| 4 | 1 | drop | spermine tetrachloride | 7 (mM) | |
| 5 | 1 | drop | sodium cacodylate | 20 (mM) | |
| 6 | 1 | drop | MPD | 5 (%(w/v)) | |
| 7 | 1 | reservoir | 18 (%) | ||
| 8 | 1 | reservoir | sodium cacodylate | 100 (mM) |






