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425D

5'-D(*AP*CP*CP*GP*GP*TP*AP*CP*CP*GP*GP*T)-3'

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RU300
Temperature [K]120
Detector technologyAREA DETECTOR
Collection date1995-03-10
DetectorXENTRONICS
Spacegroup nameP 43
Unit cell lengths40.207, 40.207, 57.575
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution25.500 - 2.800
R-factor0.219
Rwork0.219
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)IDEAL B-DNA
RMSD bond length0.010
RMSD bond angle16.900

*

Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwareULTIMA
Refinement softwareX-PLOR (3.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]25.5002.900
High resolution limit [Å]2.8002.800
Rmerge0.0560.210
Total number of observations13447

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Number of reflections22432164

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Completeness [%]97.586.8

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Redundancy62.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion

*

74

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pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111MGCL2
211MNCL2
311SPERMINE
411SODIUM CACODYLATE
511MPD
612SODIUM CACODYLATE
712MPD
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropDNA2 (mg/ml)
21drop32 (mM)
31drop3-10 (mM)
41dropspermine tetrachloride7 (mM)
51dropsodium cacodylate20 (mM)
61dropMPD5 (%(w/v))
71reservoir18 (%)
81reservoirsodium cacodylate100 (mM)

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PDB entries from 2024-05-15

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